torch.sparse¶
Warning
This API is in beta and may change in the near future.
Torch supports sparse tensors in COO(rdinate) format, which can efficiently store and process tensors for which the majority of elements are zeros.
A sparse tensor is represented as a pair of dense tensors: a tensor of values and a 2D tensor of indices. A sparse tensor can be constructed by providing these two tensors, as well as the size of the sparse tensor (which cannot be inferred from these tensors!) Suppose we want to define a sparse tensor with the entry 3 at location (0, 2), entry 4 at location (1, 0), and entry 5 at location (1, 2). We would then write:
>>> i = torch.LongTensor([[0, 1, 1],
[2, 0, 2]])
>>> v = torch.FloatTensor([3, 4, 5])
>>> torch.sparse.FloatTensor(i, v, torch.Size([2,3])).to_dense()
0 0 3
4 0 5
[torch.FloatTensor of size 2x3]
Note that the input to LongTensor is NOT a list of index tuples. If you want to write your indices this way, you should transpose before passing them to the sparse constructor:
>>> i = torch.LongTensor([[0, 2], [1, 0], [1, 2]])
>>> v = torch.FloatTensor([3, 4, 5 ])
>>> torch.sparse.FloatTensor(i.t(), v, torch.Size([2,3])).to_dense()
0 0 3
4 0 5
[torch.FloatTensor of size 2x3]
You can also construct hybrid sparse tensors, where only the first n dimensions are sparse, and the rest of the dimensions are dense.
>>> i = torch.LongTensor([[2, 4]])
>>> v = torch.FloatTensor([[1, 3], [5, 7]])
>>> torch.sparse.FloatTensor(i, v).to_dense()
0 0
0 0
1 3
0 0
5 7
[torch.FloatTensor of size 5x2]
An empty sparse tensor can be constructed by specifying its size:
>>> torch.sparse.FloatTensor(2, 3)
SparseFloatTensor of size 2x3 with indices:
[torch.LongTensor with no dimension]
and values:
[torch.FloatTensor with no dimension]
 SparseTensor has the following invariants:
sparse_dim + dense_dim = len(SparseTensor.shape)
SparseTensor._indices().shape = (sparse_dim, nnz)
SparseTensor._values().shape = (nnz, SparseTensor.shape[sparse_dim:])
Since SparseTensor._indices() is always a 2D tensor, the smallest sparse_dim = 1. Therefore, representation of a SparseTensor of sparse_dim = 0 is simply a dense tensor.
Note
Our sparse tensor format permits uncoalesced sparse tensors, where there may be duplicate coordinates in the indices; in this case, the interpretation is that the value at that index is the sum of all duplicate value entries. Uncoalesced tensors permit us to implement certain operators more efficiently.
For the most part, you shouldn’t have to care whether or not a sparse tensor is coalesced or not, as most operations will work identically given a coalesced or uncoalesced sparse tensor. However, there are two cases in which you may need to care.
First, if you repeatedly perform an operation that can produce
duplicate entries (e.g., torch.sparse.FloatTensor.add()
), you
should occasionally coalesce your sparse tensors to prevent
them from growing too large.
Second, some operators will produce different values depending on
whether or not they are coalesced or not (e.g.,
torch.sparse.FloatTensor._values()
and
torch.sparse.FloatTensor._indices()
, as well as
torch.Tensor.sparse_mask()
). These operators are
prefixed by an underscore to indicate that they reveal internal
implementation details and should be used with care, since code
that works with coalesced sparse tensors may not work with
uncoalesced sparse tensors; generally speaking, it is safest
to explicitly coalesce before working with these operators.
For example, suppose that we wanted to implement an operator
by operating directly on torch.sparse.FloatTensor._values()
.
Multiplication by a scalar can be implemented in the obvious way,
as multiplication distributes over addition; however, square root
cannot be implemented directly, since sqrt(a + b) != sqrt(a) +
sqrt(b)
(which is what would be computed if you were given an
uncoalesced tensor.)

class
torch.sparse.
FloatTensor
¶ 
add
()¶

add_
()¶

clone
()¶

dim
()¶

div
()¶

div_
()¶

get_device
()¶

hspmm
()¶

mm
()¶

mul
()¶

mul_
()¶

narrow_copy
()¶

resizeAs_
()¶

size
()¶

spadd
()¶

spmm
()¶

sspaddmm
()¶

sspmm
()¶

sub
()¶

sub_
()¶

t_
()¶

to_dense
()¶

transpose
()¶

transpose_
()¶

zero_
()¶

coalesce
()¶

is_coalesced
()¶

_indices
()¶

_values
()¶

_nnz
()¶

Functions¶

torch.sparse.
addmm
(mat, mat1, mat2, beta=1, alpha=1)[source]¶ This function does exact same thing as
torch.addmm()
in the forward, except that it supports backward for sparse matrixmat1
.mat1
need to have sparse_dim = 2. Note that the gradients ofmat1
is a coalesced sparse tensor.

torch.sparse.
mm
(mat1, mat2)[source]¶ Performs a matrix multiplication of the sparse matrix
mat1
and dense matrixmat2
. Similar totorch.mm()
, Ifmat1
is a $(n \times m)$ tensor,mat2
is a $(m \times p)$ tensor, out will be a $(n \times p)$ dense tensor.mat1
need to have sparse_dim = 2. This function also supports backward for both matrices. Note that the gradients ofmat1
is a coalesced sparse tensor. Parameters
mat1 (SparseTensor) – the first sparse matrix to be multiplied
mat2 (Tensor) – the second dense matrix to be multiplied
Example:
>>> a = torch.randn(2, 3).to_sparse().requires_grad_(True) >>> a tensor(indices=tensor([[0, 0, 0, 1, 1, 1], [0, 1, 2, 0, 1, 2]]), values=tensor([ 1.5901, 0.0183, 0.6146, 1.8061, 0.0112, 0.6302]), size=(2, 3), nnz=6, layout=torch.sparse_coo, requires_grad=True) >>> b = torch.randn(3, 2, requires_grad=True) >>> b tensor([[0.6479, 0.7874], [1.2056, 0.5641], [1.1716, 0.9923]], requires_grad=True) >>> y = torch.sparse.mm(a, b) >>> y tensor([[0.3323, 1.8723], [1.8951, 0.7904]], grad_fn=<SparseAddmmBackward>) >>> y.sum().backward() >>> a.grad tensor(indices=tensor([[0, 0, 0, 1, 1, 1], [0, 1, 2, 0, 1, 2]]), values=tensor([ 0.1394, 0.6415, 2.1639, 0.1394, 0.6415, 2.1639]), size=(2, 3), nnz=6, layout=torch.sparse_coo)

torch.sparse.
sum
(input, dim=None, dtype=None)[source]¶ Returns the sum of each row of SparseTensor
input
in the given dimensionsdim
. Ifdim
is a list of dimensions, reduce over all of them. When sum over allsparse_dim
, this method returns a Tensor instead of SparseTensor.All summed
dim
are squeezed (seetorch.squeeze()
), resulting an output tensor havingdim
fewer dimensions thaninput
.During backward, only gradients at
nnz
locations ofinput
will propagate back. Note that the gradients ofinput
is coalesced. Parameters
Example:
>>> nnz = 3 >>> dims = [5, 5, 2, 3] >>> I = torch.cat([torch.randint(0, dims[0], size=(nnz,)), torch.randint(0, dims[1], size=(nnz,))], 0).reshape(2, nnz) >>> V = torch.randn(nnz, dims[2], dims[3]) >>> size = torch.Size(dims) >>> S = torch.sparse_coo_tensor(I, V, size) >>> S tensor(indices=tensor([[2, 0, 3], [2, 4, 1]]), values=tensor([[[0.6438, 1.6467, 1.4004], [ 0.3411, 0.0918, 0.2312]], [[ 0.5348, 0.0634, 2.0494], [0.7125, 1.0646, 2.1844]], [[ 0.1276, 0.1874, 0.6334], [1.9682, 0.5340, 0.7483]]]), size=(5, 5, 2, 3), nnz=3, layout=torch.sparse_coo) # when sum over only part of sparse_dims, return a SparseTensor >>> torch.sparse.sum(S, [1, 3]) tensor(indices=tensor([[0, 2, 3]]), values=tensor([[1.4512, 0.4073], [0.8901, 0.2017], [0.3183, 1.7539]]), size=(5, 2), nnz=3, layout=torch.sparse_coo) # when sum over all sparse dim, return a dense Tensor # with summed dims squeezed >>> torch.sparse.sum(S, [0, 1, 3]) tensor([2.6596, 1.1450])